- Battery Creek High School
- Beaufort Elementary School
- Beaufort High School
- Beaufort Middle School
- Bluffton Elementary School
- Bluffton High School
- Broad River Elementary School
- Coosa Elementary School
- Daufuskie Island School
- H E McCracken Middle School
- Hilton Head Island Early Childhood Center
- Hilton Head Island High School
- Hilton Head Island International Baccalaureate
- Hilton Head Island Middle School
- Hilton Head Island School for the Creative Arts
- James J Davis Elementary School
- Joseph Shanklin Elementary School
- Lady's Island Elementary School
- Lady's Island Middle School
- Michael C Riley Elementary School
- Mossy Oaks Elementary School
- Okatie Elementary School
- Port Royal Elementary School
- Robert Smalls Middle School
- Shell Point Elementary School
- St. Helena Early Learning Center
- St. Helena Elementary School
- Whale Branch Elementary School
- Whale Branch Middle School